PHENOTYPE OVERVIEW

Choose the clinical chapter that matches the question.

Use this page to find the clinical chapter that matches the question; it is not a prognosis or symptom checklist.

7 CLINICAL CHAPTERS

Each chapter starts with one main clinical question.

The clinical areas overlap in real life, but each chapter starts from a different question. Open the primary chapter first, then follow the linked system when the observation crosses domains.

01

Development & memory

Primary question: Was a skill acquired, retained, retrieved, expressed, variably accessible, or truly lost?

Language, learning, memory domains, processing, communication access, school, adaptive function, and adult change.

Development / language · Function / school / adult · Behavior / sensoryOpen chapter →
02

Neurology & seizures

Primary question: What event was observed, what physiology was captured, and what remains unresolved?

Seizures, EEG background, spells, sleep-state context, event recovery, and cardiorespiratory overlap.

Seizure / EEG / spells · Sleep / state / fatigueOpen chapter →
03

Movement, gait & tics

Primary question: Is the movement long-standing, episodic, limited by pain, or newly acquired?

Tone, strength, gait, coordination, laterality, pain, movement events, vision, mobility, and recovery.

Motor / tone / gait / visionOpen chapter →
04

Oral, GI, ENT & growth

Primary question: Which area—oral function, GI, ENT or airway, growth, endocrine, or bone—best matches the concern?

Oral motor function, swallowing, dentition, GI motility, nutrition and hydration, hearing and airway, growth, endocrine, and bone.

Oral / dental / chewing · GI / fuel / bowel · ENT / hearing / airway · Growth / endocrine / puberty / boneOpen chapter →
05

Immune, skin & mucosa

Primary question: What was measured, what was observed, and what only happened around the same time?

Infection, antibody response, inflammation, mucosa, skin, healing, allergy, vascular and barrier observations, and recovery.

Immune / skin / mucosalOpen chapter →
06

Cardiac & autonomic

Primary question: Which measurements taken during the event can distinguish heart rhythm, fainting, breathing, hydration, temperature, urinary, or neurologic causes?

Heart rate and rhythm, orthostatic symptoms, faint-like events, oxygenation, sweating, temperature, urinary findings, and recovery.

Autonomic / cardiac / urinary / temperatureOpen chapter →
07

Neurobehavioral & mental health

Primary question: What is the observable change, and which body, brain, communication, mental-health, or environmental state could produce it?

Regulation, distress, attention, anxiety, rigidity, mood, sensory processing, participation, diagnosis, and support response.

Behavior / sensory · Function / school / adultOpen chapter →

Start where the measurement can answer the presenting concern.

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Presenting concerns, primary chapters, linked chapters, and the first measurement rule.
Presenting concernPrimary chapterImportant linked chapterFirst measurement rule
A new staring, collapse, confusion, or nocturnal eventNeurology & seizuresCardiac & autonomicCapture the representative event and recovery; align EEG, ECG, oxygenation, sleep, and position with the clinical question.
A skill is inconsistent or appears lostDevelopment & memoryNeurology & seizuresAnchor the prior baseline and compare the same function across state, support, and recovery.
Feeding, bowel, hearing, airway, or growth burdenOral, GI, ENT & growthImmune, skin & mucosaKeep oral, GI, ENT, growth, mucosal, and nutritional measurements parallel rather than forcing one pathway.
Gait, weakness, pain, laterality, or episodic movementMovement, gait & ticsNeurology & seizuresSeparate persistent motor capacity from episodic access, pain, orthopedic burden, and captured events.
Illness-linked or prolonged multisystem changeImmune, skin & mucosaNatural history & state transitionsRecord objective findings, competing explanations, intervention, and the return-to-baseline curve.
Behavior, withdrawal, aggression, fear, or participation changeNeurobehavioral & mental healthDevelopment & memoryDescribe the observation first; assess safety, communication, pain, physiology, mental health, environment, and support.

CROSS-STUDY HUMAN PHENOTYPE MATRIXEach study keeps its own participant count.

HUMAN STUDY SOURCES106 rare-variant reports or cohorts, 1 VUS case, 2 Tourette-susceptibility studies, and 1 American Epilepsy Society abstract
REPORTED FEATURE RESULTS55Shown with each study’s participant count
CONNECTED PEOPLE63Shown separately as information availability and never combined with published study results

Scroll horizontally to review every column.

Selected features shown as each study reported them; results from different studies are not combined.
StudyStudy NIntellectual disability / developmental delayAutism spectrum disorderSeizure or epilepsyDysmetria / ataxiaFeeding or GI entryOverlap / limits
Okamoto et al. 2017Peer reviewed · case report1Not extracted from the primary abstract.1/1severe intellectual disabilityNRNot reported / not extractedNRNot reported / not extractedNRNot reported / not extractedNRNot reported / not extractedThis individual is repeated in later literature-synthesis tables; do not count the synthesis as a new participant.
Shen et al. 2019Peer reviewed · case report1Not extracted from the primary abstract.NRNot reported / not extractedNRNot reported / not extractedNRNot reported / not extractedNRNot reported / not extractedNRNot reported / not extractedThe case is repeated in later literature-synthesis tables; retain the primary report as the participant source.
Liu et al. 2021Peer reviewed · family study22 female2/2mild intellectual disabilityNRNot reported / not extracted2/2seizuresNRNot reported / not extractedNRNot reported / not extractedTwo people, one family, and one independent allele event. Later literature tables repeat both individuals.
Cordova et al. 2024Peer reviewed · case series33 male2/3ID/DD (intellectual disability/developmental delay)3/3ASD (autism spectrum disorder)2/3Seizures2/3Dysmetria/ataxic gaitNRNot reported / not extractedOne Brain Gene Registry participant appears again in the Papendorp 2025 supplement. The article's prior-literature totals are a synthesis, not a new cohort.
Papendorp et al. 2025Preprint · mixed human/model prospective cohort2310 male; 13 female20/221 missing · mild or moderate ID, or borderline cognitive classification9/221 missing · ASD consensus: Y onlyCONFLICTPrimary text and supplement do not reconcile16/23appendicular and/or truncal ataxia coded present17/23any feeding or gastrointestinal entry versus 'none noted'At least one participant overlaps Cordova 2024; the later AES N=26 abstract is likely an expanded overlapping cohort. Never sum these denominators.
Liao et al. 2025Peer reviewed · case report11 female1/1mild intellectual disability; WAIS 65NRNot reported / not extracted0/1no seizuresNRNot reported / not extractedNRNot reported / not extractedThe article reviews prior variants; only the new index proband is counted here.
Nie et al. 2025Conference abstract · prospective natural history2612 male; 14 femaleNRNot reported / not extractedNRNot reported / not extractedNRNot reported / not extractedNRNot reported / not extractedNRNot reported / not extractedSame research group and highly similar cohort architecture as Papendorp 2025; treat as an expanded overlapping cohort and never sum the two study Ns.
How overlapping studies and source disagreements are handled

VUS COMPARATOR

Pulatov 2025 is shown separately.

The single case is useful descriptive context, but the ASH1L missense finding remained a VUS and additional variants were present. It is not included in confirmed-variant totals.

OVERLAPPING PARTICIPANTS

Papendorp 23 and the American Epilepsy Society 26 are not added together.

At least one Cordova participant appears again in Papendorp, and the American Epilepsy Society cohort is likely an expanded overlapping cohort. No combined participant total is calculated.

SOURCE DISAGREEMENT

The Papendorp seizure and EEG counts do not reconcile.

The primary text and public supplement report different sex-specific counts. Both are documented in the download, so no combined seizure or EEG total is calculated.

See how much connected-family information is available across all 15 areas

Scroll horizontally to review every column.

Information available for each clinical area across the 63 connected people.
Clinical areaInformation availableArea not addressedOf those, original source document availableTotal
Birth / feeding2934529 + 34 = 63
Genetics6303563 + 0 = 63
Development / language50131250 + 13 = 63
Seizure / EEG / spells43201643 + 20 = 63
Sleep / state / fatigue4122741 + 22 = 63
Oral / dental / chewing3726537 + 26 = 63
GI / fuel / bowel3825638 + 25 = 63
ENT / hearing / airway3330633 + 30 = 63
Motor / tone / gait / vision49141249 + 14 = 63
Behavior / sensory49141449 + 14 = 63
Immune / skin / mucosal38251138 + 25 = 63
Autonomic / cardiac / urinary / temperature30331030 + 33 = 63
Growth / endocrine / puberty / bone37261137 + 26 = 63
Medication / anesthesia4023940 + 23 = 63
Function / school / adult3429334 + 29 = 63

HOW TO READ EVERY CHAPTER

Two rules travel with every chapter.

01

A chapter is not a diagnosis

Clinical domains organize questions. Ordinary differential diagnosis, additional findings, medications, environment, and unrelated disease remain active.

02

A new change deserves its own timeline

The person’s baseline, onset, context, measurement, intervention, duration, and recovery should remain attached.